Auburn University Bioinformatics Bootcamp

SCHEDULE

Pre-bootcamp

Homework

Using ASC For Windows Users

Accessing Remote Computer

ASC Queue System Tutorial

Exercises

Exercise-1

Exercise-2

Exercise-3

Exercise-4

Exercise-5

Exercise-6

Exercise-7

Exercise-8

Exercise-9

Exercise-10

Lecture Slides

Monday

Sequencing Technology

Assembly

Bash scripting

Tuesday

Text Parsing

Contig Assessment

MITOS

Trinotate

Wednesday

Mapping

Variant Calling

Thursday

Differential Expression

Intro to Git

Friday

Interactive Genome Viewer

R Studio

Archiving Sequence Data

Articles

So you want to be a computational biologist?

An introduction to Linux for bioinformatics

Resources

Alabama Super Computer Manual

Alabama Super Computer Queue

Alabama Super Computer Queue Tutorial

AWK Cheatsheet

Git Cheatsheet

Linux Command Line Cheatsheet

Regular Expressions Cheatsheet

Scripting Cheatsheet

Sed Cheatsheet

Vim Cheatsheet